Alanine

Chemical structure of L-alanine
Alanine
Systematic (IUPAC) name
(S)-2-aminopropanoic acid
Identifiers
CAS number	56-41-7
PubChem	5950
Chemical data
Formula	C3H7NO2
Mol. weight	89.1
SMILES	C[C@H](N)C(O)=O
Complete data

Alanine is an one of the simplest amino acids in terms of molecular structure and one of the most widely found in protein. In humans, the L-isomer, which is the only form that is involved in protein synthesis, is one of the 20 standard amino acids required for normal functioning. However, it is considered to be non-essential since it does not have to be taken in with the diet, but can be synthesized by the human body from other compounds through chemical reactions. It has the chemical formula HO₂CCH(NH₂)CH₃.

Alanine is classified as an nonpolar amino acid. L-alanine is second only to leucine, accounting for 7.8% of the primary structure in a sample of 1,150 proteins (Doolittle 1989). Davidson (2007) reports that it averages about 9% of average protein composition on a per mole basis. Alanine is also involved in the metabolism of tryptophan and the vitamin pyridoxine. Its unique structure makes it one of the principle components of silk, along with glycine, providing the unique characteristics of this natural protein fiber.

The isomer D-alanine occurs in bacterial cell walls and in some peptide antibiotics.

Alanine's three letter code is ala, its one letter code is A, and its codons are GCU, GCC, GCA, and GCG (IUPAC-IUB 1983).

Structure

In biochemistry, the term amino acid is frequently used to refer specifically to alpha amino acids: those amino acids in which the amino and carboxylate groups are attached to the same carbon, the so-called α–carbon (alpha carbon). The general structure of these alpha amino acids is:

     R
     |
 H2N-C-COOH
     |
     H

where R represents a side chain specific to each amino acid. The exception to this basic structure is proline, whose side chain cyclizes onto the backbone, forming a ring structure in which a secondary amino group replaces the primary amino group.

Most amino acids occur in two possible optical isomers, called D and L. The L amino acids represent the vast majority of amino acids found in proteins. They are called proteinogenic amino acids. As the name "proteinogenic" (literally, protein building) suggests, these amino acid are encoded by the standard genetic code and participate in the process of protein synthesis.

In alanine, the α-carbon atom is bound with a levorotatory methyl group (-CH₃), making it one of the simplest α-amino acids with respect to molecular structure (Davidson 2007)and also resulting in alanine being classified as an aliphatic amino acid. The methyl group of alanine is non-reactive and is thus almost never directly involved in protein function.

Sources and biosynthesis

Any protein-containing food such as meat, poultry, fish, eggs or dairy products is rich in alanine. Racemic alanine (equal amounts of left- and right-handed stereoisomers) can be prepared via the addition of hydrogen cyanide and ammonia to acetaldehyde by the Strecker reaction (Kandall and McKenzie 1941).

Alanine is most commonly produced in the body by reductive amination (conversion of a carbonyl group to an amine) of pyruvate. Because transamination reactions are readily reversible and pyruvate pervasive, alanine can be easily formed and thus has close links to metabolic pathways such as glycolysis, gluconeogenesis, and the citric acid cycle.

Alanine also arises together with lactate from protein via the alanine cycle. Thus, when muscles produce lactate during times of decreased oxygen, they also produce alanine. This alanine is shuttled to the liver where it is used to make glucose.

Silk

Alanine is a key component in spider silk. Spider silk is a remarkably strong material, with a tensile strength is comparable to that of high-grade steel (Shao and Vollrath 2002).

Spider dragline silk is made up of the protein fibroin, which is a combination of the proteins spidroin 1 and spidroin 2. The bulk of these proteins are made up of alanine (Ala) and glycine (Gly), with the remaining components mostly the amino acids proline (Pro), tyrosine (Tyr), arginine (Arg), glutamine (Gln), serine (Ser), and leucine (Leu) (UB 2007). Spidroin 1 and 2 are made up of polyalanine regions with about 4 to 9 alanine monomers in a block (Beek et al. report approximately 8 monomers) and glycine rich areas with a sequence of five amino acids continuously repeated, such as Gly-Pro-Gly-Gln-Gln (Beek et al. 2002; UB 2007).

The general trend in spider silk structure thus is a sequence of amino acids (usually alternating glycine and alanine, or alanine alone) that self-assemble into a beta sheet conformation. These "Ala rich" blocks are separated by segments of amino acids with bulky side-groups. The beta sheets stack to form crystals, whereas the other segments form amorphous domains. It is the interplay between the hard crystalline segments, and the elastic semi- amorphous regions, that gives spider silk its extraordinary properties. The fact that the major amino acids in spider silk are the two smallest amino acids, and lack bulky side groups, allows them to pack together tightly (UB 2007).

The glycine-rich regions give spider silk its elasticity, as each sequence of five amino acids is followed by a 180 degree turn, resulting in a spiral. Capture silk is the most elastic, with about 43 repeats on average, and can extend 2 to 4 times its original length, while dragline silk only repeats about 9 times and can extend about 30% of original length (UB 2007).

— according to Nature

MB . INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY and INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN)

Nomenclature and Symbolism for Amino Acids and Peptides

(Recommendations 1983)

External links

• Computational Chemistry Wiki

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